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bio-workflows-cnv-pipeline

Official

End-to-end CNV workflow from BAMs.

Data & Analytics#bioinformatics#pipeline#sequencing#cnvkit#cnv#copy-number#exome
Authorstellaromics
Version1.0.0
Installs0

System Documentation

What problem does it solve?

End-to-end CNV detection from sequencing data enables researchers to identify copy-number alterations efficiently, integrating analysis, visualization, and annotation in a reproducible workflow.

Core Features & Use Cases

  • End-to-end CNV analysis: From raw BAMs to CNV calls, plots, and gene annotations.
  • Visualization & Annotation: Generate plots and gene-level metrics for CNVs.
  • Use Case: Detect CNVs in tumor-normal exome panels and annotate affected genes for downstream interpretation.

Quick Start

Run the end-to-end CNVkit-based pipeline on your BAMs to generate CNV calls, visualizations, and gene annotations.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

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Please help me install this Skill:
Name: bio-workflows-cnv-pipeline
Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-cnv-pipeline

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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