bio-workflows-cytometry-pipeline
OfficialEnd-to-end cytometry workflow: from FCS to stats.
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Automates end-to-end cytometry analysis from raw FCS to differential results, coordinating preprocessing, clustering or gating, and statistical testing with CATALYST/diffcyt.
Core Features & Use Cases
- Automated end-to-end data processing: loading, compensation, transformation, QC, clustering/gating, dimensionality reduction, and differential analysis.
- Flexible workflows for Flow and CyTOF data; supports both clustering and manual gating; provides DA and DS analyses.
- Example: immunophenotyping studies comparing patient groups across samples and conditions.
Quick Start
Provide your FCS files and panel metadata to run the full pipeline and generate differential analysis results.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-workflows-cytometry-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-cytometry-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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