bio-workflows-expression-to-pathways
CommunityFrom DE results to enriched pathways with R.
Data & Analytics#differential-expression#reactome#pathway-enrichment#gsea#go-enrichment#kegg-pathways#clusterProfiler
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This workflow translates differential expression results into biological pathway insights by performing GO, KEGG, and Reactome enrichment analyses with visualization.
Core Features & Use Cases
- DE to Pathway Enrichment: converts DE gene lists to enriched pathway terms (GO, KEGG, Reactome) and supports visualization.
- GSEA Support: includes gene-set enrichment analysis for ranked DE data.
- Use Case: Researchers can obtain enriched pathways and publication-ready plots for reporting from RNA-seq DE results.
Quick Start
Run the expression-to-pathways workflow on a ranked DE gene list to generate GO/KEGG/Reactome enrichment plots.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-workflows-expression-to-pathways Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-workflows-expression-to-pathways Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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