bio-workflows-genome-annotation-pipeline
OfficialEnd-to-end genome annotation pipeline.
Education & Research#bioinformatics#genome-annotation#repeat-masking#gene-prediction#functional-annotation#ncRNA
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This pipeline provides an automated, end-to-end workflow to annotate genomes, reducing manual curation time and ensuring consistent, reproducible results.
Core Features & Use Cases
- End-to-end genome annotation: from repeats to functional annotation for both prokaryotes and eukaryotes.
- QC-driven checks and results: integrates BUSCO and other quality checks to ensure annotation reliability.
- Use Case: Annotate a newly assembled genome from scratch to produce annotated outputs (GFF3, proteins, and functional tables).
Quick Start
Annotate my newly assembled genome from scratch using this end-to-end annotation pipeline.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-workflows-genome-annotation-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-genome-annotation-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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