bio-workflows-genome-assembly-pipeline
OfficialEnd-to-end genome assembly from reads.
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
End-to-end genome assembly from raw sequencing reads, providing a guided workflow to go from QC to polished assembly and quality assessment.
Core Features & Use Cases
- Supports short-read, long-read, and hybrid assemblies using SPAdes, Flye, and polishing steps
- End-to-end pipeline from QC to assembly, polishing, and QC metrics (QUAST, BUSCO)
- Use Case: A microbiology researcher with Illumina data can assemble a bacterial genome and check assembly quality.
Quick Start
Assemble a bacterial genome from Illumina reads using the SPAdes-based path, then polish and assess quality.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-workflows-genome-assembly-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-genome-assembly-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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