bio-workflows-longread-sv-pipeline
OfficialAutomates long-read SV detection.
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Long-read sequencing experiments generate rich data but require a guided, end-to-end workflow to detect structural variants efficiently and reproducibly.
Core Features & Use Cases
- End-to-end SV detection: from QC and alignment to SV calling with Sniffles or cuteSV, filtering, and optional annotation.
- Multi-sample support: supports joint analysis and merging SV calls across samples.
- Adaptable for ONT and PacBio: handles both nanopore and HiFi data with appropriate mapper and caller settings.
Quick Start
Run the long-read SV pipeline on ONT or PacBio data to detect structural variants using minimap2 and Sniffles or cuteSV.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-workflows-longread-sv-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-longread-sv-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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