bio-workflows-metabolic-modeling-pipeline

What problem does it solve?

End-to-end genome-scale metabolic modeling from genome sequence to flux predictions, enabling researchers to build and analyze metabolic models from raw genomic data without manual workflow assembly.

Core Features & Use Cases

• Automates reconstruction with CarveMe, model QC with memote, gap-filling, FBA/FVA analysis, and gene essentiality prediction.
• Supports context-specific modeling and phenotype prediction from expression data.
• Suitable for researchers designing, validating, and deploying GEM workflows across bacteria and other organisms.

Quick Start

Run the pipeline on a genome sequence to generate a draft model and evaluate its quality.