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bio-workflows-metabolomics-pipeline

Official

End-to-end LC-MS metabolomics workflow.

Data & Analytics#bioinformatics#metabolomics#data-analysis#pathway-analysis#lc-ms#xcms
Authorstellaromics
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Orchestrates an end-to-end LC-MS metabolomics analysis from raw data to meaningful insights, reducing manual setup and errors in complex pipelines.

Core Features & Use Cases

  • End-to-end pipeline orchestration: coordinates peak detection, alignment, normalization, statistics, annotation, and pathway mapping using XCMS, MetaboAnalystR, CAMERA, and ggplot2.
  • Broad applicability: supports untargeted metabolomics, lipidomics, and targeted analyses across diverse datasets and experimental designs.
  • Use Case: a researcher runs the full LC-MS workflow to identify differential metabolites and enriched pathways across conditions.

Quick Start

Run the end-to-end LC-MS metabolomics pipeline on your raw data to obtain differential metabolites and pathway insights.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bio-workflows-metabolomics-pipeline
Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-metabolomics-pipeline

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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