bio-workflows-metagenomics-pipeline
OfficialMetagenomics workflow from FASTQ to profiles.
Data & Analytics#metagenomics#taxonomic-profiling#kraken2#bracken#humann#metaphlan#functional-profiling
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
End-to-end metagenomics analysis pipeline that transforms raw FASTQ data into taxonomic and functional profiles, enabling researchers to move from data to insights with reduced manual steps.
Core Features & Use Cases
- End-to-end QC, host removal, taxonomic profiling (Kraken2/Bracken or MetaPhlAn), and HUMAnN functional profiling to deliver comprehensive metagenomic analyses.
- Use case: profile microbial communities across samples, compare pathways, and generate ready-to-visualize results for publication.
Quick Start
Run the metagenomics pipeline on a dataset of shotgun reads to obtain taxonomic and functional profiles.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: bio-workflows-metagenomics-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-metagenomics-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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