bio-workflows-microbiome-pipeline
OfficialEnd-to-end 16S microbiome analysis pipeline.
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Complete, end-to-end 16S amplicon analysis from raw FASTQ reads to differential abundance results, orchestrating denoising, taxonomy assignment, and diversity analyses in a reproducible workflow.
Core Features & Use Cases
- Automated DADA2-based ASV inference and quality filtering for 16S data.
- Taxonomy assignment with reliable reference databases and downstream diversity analyses (alpha and beta, PERMANOVA).
- Produce publication-ready tables and figures for differential abundance and community structure.
Quick Start
Run the microbiome pipeline on 16S FASTQ data to generate taxonomic assignments, diversity analyses, and differential abundance results.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-workflows-microbiome-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-microbiome-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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