bio-workflows-proteomics-pipeline
OfficialProteomics pipeline: from data to differential stats.
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
End-to-end proteomics workflow that moves from raw mass spectrometry outputs to differential protein abundance, orchestrating data import, normalization, imputation, and statistical testing with MSstats or limma.
Core Features & Use Cases
- End-to-end data import, QC, normalization, imputation, and differential analysis
- Supports MaxQuant and DIA-NN outputs; flexible workflow variants with limma or MSstats
- Use Case: Researchers want a reproducible pipeline to produce differential proteins and visualizations from their proteomics data.
Quick Start
Run the proteomics pipeline on your MaxQuant output to generate differential_proteins and QC plots.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: bio-workflows-proteomics-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-proteomics-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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