bio-workflows-smrna-pipeline
OfficialOrchestrate end-to-end small RNA-seq analyses.
Data & Analytics#bioinformatics#pipeline#differential-expression#small-rna-seq#mirna#target-prediction#mirdeep2
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
End-to-end orchestration of a small RNA-seq workflow from raw FASTQ to differential miRNA expression and downstream target prediction, reducing manual scripting and improving reproducibility.
Core Features & Use Cases
- End-to-end pipeline: trimming, mapping, miRNA quantification, differential expression, and target prediction.
- QC and reproducibility: built-in checks and clear reporting for pipeline runs.
- Use Case: Analysts process miRNA-seq datasets to identify differentially expressed miRNAs between conditions and predict target genes.
Quick Start
Run the complete small RNA-seq workflow on your dataset from FASTQ to differential miRNA expression.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-workflows-smrna-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-smrna-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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