bioinformatics

Retrieve bioinformatics references and pipelines from bioSkills and ClawBio sources.

Updated Mar 24, 2026
One-click install
npx skills add https://github.com/1thirteeng3/greenmoire --skill bioinformatics-1thirteeng3
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: bioinformatics
Source: https://github.com/1thirteeng3/greenmoire/tree/main/integrations/hermes-agent/optional-skills/research/bioinformatics
Command: npx skills add https://github.com/1thirteeng3/greenmoire --skill bioinformatics-1thirteeng3

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Researchers often need rapid, domain-specific guidance across diverse bioinformatics topics without memorizing or constructing every workflow from scratch.

Core Features & Use Cases

  • Domain-guided reference access: quickly locate and read SKILL.md frontmatter-guided topics from bioSkills and ClawBio libraries.
  • On-demand learning pathways: dynamically fetch domain topics such as genomics, transcriptomics, single-cell analysis, metagenomics, and structural biology to inform experiments.
  • Guidance for pipelines and analysis prompts: use as a reference to design or critique analysis plans, parameter choices, and best practices.

Quick Start

Inquire about a specific bioinformatics topic (e.g., "variant calling with GATK") to retrieve domain references and recommended reading.

Frequently Asked Questions about bioinformatics

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I find bioinformatics pipelines for single-cell analysis?

Single-cell analysis pipelines are indexed and retrieved on demand from bioSkills and ClawBio libraries using domain-guided SKILL.md frontmatter. Inquire about a specific topic to fetch relevant runnable workflows and reference materials dynamically.

What bioinformatics domains are covered for on-demand reference retrieval?

On-demand reference retrieval covers genomics, transcriptomics, single-cell analysis, metagenomics, structural biology, and pharmacogenomics. These computational biology domains are indexed to provide rapid access to relevant skills, guidance, and runnable pipelines.

Can I use this to look up variant calling workflows and best practices?

Variant calling workflows and best practices are accessible by inquiring about the specific topic to retrieve domain references. The system applies domain-guided access to fetch relevant reading materials and recommended analysis plans from indexed bioinformatics libraries.

Do I need specific software installed to access these bioinformatics skills?

No specific software dependencies are required to access bioinformatics skills. The system retrieves domain-specific references and runnable pipelines on demand from indexed bioSkills and ClawBio sources using YAML frontmatter-guided queries.

What's the best way to design a metagenomics analysis plan using reference material?

Designing a metagenomics analysis plan is supported through on-demand retrieval of domain references and guidance. Fetch indexed topics dynamically to inform experiments, critique parameter choices, and validate best practices from computational biology libraries.

Are there limitations to the bioinformatics skills available on demand?

Available bioinformatics skills are limited to indexed content from bioSkills and ClawBio sources. Retrieval requires YAML frontmatter with a name and description, and coverage is constrained to indexed computational biology topics and their associated references.