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bioinformatics

Index and fetch domain-specific bioinformatics skills and reference material.

Updated Jun 28, 2026
Search Tags:#bioinformatics#genomics#single-cell#reference-material#metagenomics#transcriptomics#variant-calling
One-click install
npx skills add https://github.com/jleechanorg/hermes-agent --skill bioinformatics-jleechanorg
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: bioinformatics
Source: https://github.com/jleechanorg/hermes-agent/tree/main/optional-skills/research/bioinformatics
Command: npx skills add https://github.com/jleechanorg/hermes-agent --skill bioinformatics-jleechanorg

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Provides centralized access to hundreds of domain-specific bioinformatics skills and on-demand reference materials, saving researchers time and aligning guidance with real-world pipelines.

Core Features & Use Cases

  • Indexes two major libraries (bioSkills and ClawBio) and fetches domain-specific SKILL.md content on demand, enabling rapid lookup and learning.
  • Supports genomics, transcriptomics, single-cell, variant calling, pharmacogenomics, metagenomics, and structural biology workflows with reference material.
  • Use Case: A researcher wants a guided cookbook for a variant-calling workflow and pulls the relevant skill to view parameters, examples, and best practices.

Quick Start

Identify your domain of interest (e.g., genomics or single-cell) and fetch the corresponding bioSkills or ClawBio skill from the gateway to read its SKILL.md.

Frequently Asked Questions about bioinformatics

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I find reference material for variant calling workflows?▼

To find reference material for variant calling workflows, you can use this gateway to fetch domain-specific SKILL.md content on demand. It indexes bioSkills and ClawBio libraries to provide parameters, examples, and best practices for genomics analysis.

Can I retrieve skills for single-cell analysis and transcriptomics from one place?▼

Yes, you can retrieve skills for single-cell analysis and transcriptomics from this centralized gateway. It indexes hundreds of domain-specific bioinformatics skills to guide researchers across multiple omics domains.

What bioinformatics domains are supported by this skill gateway?▼

The bioinformatics skill gateway supports genomics, transcriptomics, single-cell analysis, variant calling, pharmacogenomics, metagenomics, and structural biology workflows by fetching relevant reference materials on demand.

How do I get started using the bioinformatics skill gateway?▼

To get started using the bioinformatics skill gateway, identify your domain of interest such as genomics or single-cell, then fetch the corresponding bioSkills or ClawBio skill to read its SKILL.md for guidance.

Does this gateway integrate with external repositories for cross-repo bioinformatics skills?▼

Yes, the gateway integrates across repositories by indexing the bioSkills and ClawBio libraries. It satisfies frontmatter-based discovery and on-demand material retrieval to provide centralized access to domain-specific skills.

What is the best way to access metagenomics workflow guidance and parameters?▼

The best way to access metagenomics workflow guidance is to query this gateway for domain-specific reference materials. It fetches relevant skills containing parameters, examples, and best practices aligned with real-world pipelines.

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