biomni

Automate multi-step biomedical research tasks with dynamic code generation and execution.

52|6|Updated Nov 24, 2025
One-click install
npx skills add https://github.com/ovachiever/droid-tings --skill biomni
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: biomni
Source: https://github.com/ovachiever/droid-tings/tree/main/skills/biomni
Command: npx skills add https://github.com/ovachiever/droid-tings --skill biomni

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires biomni, and includes scripts (resource) and references (resource) components.

What problem does it solve?

Biomni is an autonomous biomedical AI agent framework that decomposes complex research tasks, retrieves biomedical knowledge, generates and executes analysis code, and presents results end-to-end. It aims to accelerate genomic, proteomic, drug discovery, and clinical analysis workflows by orchestrating multi-step reasoning and tooling.

Core Features & Use Cases

  • Multi-step biological reasoning and planning
  • Code generation and execution for data analysis
  • Knowledge integration from ~11 GB of biomedical sources
  • Cross-domain problem solving (genomics, proteomics, drug discovery, clinical)
  • MCP-like ecosystem with modular tools, resources, and prompts

Real-world tasks include CRISPR screening design, single-cell RNA-seq analysis, GWAS interpretation, ADMET prediction, and rare-disease variant interpretation.

Quick Start

Install Biomni and initialize an A1 agent pointing to your data. Then run a multi-step biomedical analysis and save a pipeline report.

Frequently Asked Questions about biomni

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate multi-step biomedical analysis workflows with code generation?

Biomni automates biomedical analysis by decomposing complex tasks into steps, generating and executing analysis code dynamically, and retrieving knowledge from integrated genomics, drug discovery, and clinical databases. Initialize an agent pointing to your data, then run your analysis end-to-end with a single pipeline.

Can I use Biomni for CRISPR screening design and single-cell RNA-seq analysis?

Yes. Biomni handles CRISPR screening design, single-cell RNA-seq analysis, GWAS interpretation, and ADMET prediction across genomics and drug discovery workflows. It orchestrates multi-step reasoning and code execution for these domain-specific tasks.

Does Biomni work with multiple LLM providers like Claude, OpenAI, and Google Gemini?

Biomni integrates provider-agnostic LLM support across Anthropic Claude, OpenAI, Azure OpenAI, Google Gemini, Groq, AWS Bedrock, and custom endpoints with configurable settings. Switch providers without changing your analysis code.

What data sources and knowledge does Biomni retrieve from for biomedical research?

Biomni retrieves biomedical knowledge from approximately 11 GB of integrated databases and literature covering genomics, proteomics, drug discovery, and clinical analysis domains. This integrated knowledge supports variant interpretation, rare disease diagnosis, and protocol optimization.

How do I integrate Biomni into an existing genomics or drug discovery pipeline?

Biomni functions as a modular MCP-like ecosystem with configurable tools, resources, and prompts that fit into existing workflows. It handles autonomous task decomposition and code generation, enabling integration as a central reasoning layer for downstream lab protocol and analysis tools.

What are the prerequisites for running Biomni analysis tasks?

Install Biomni, configure an LLM provider endpoint, and prepare input data. Biomni handles knowledge retrieval and code generation internally, so no specialized bioinformatics software installation is required for core autonomous reasoning and task decomposition.