Manipulate biological sequences and parse FASTA, GenBank, and PDB files.
npx skills add https://github.com/dp-archive/archive --skill biopython-dp-archive
Please help me install this Agent Skill. Skill: biopython Source: https://github.com/dp-archive/archive/tree/main/seed_skills/biopython Command: npx skills add https://github.com/dp-archive/archive --skill biopython-dp-archive
This Skill simplifies complex bioinformatics tasks, enabling users to analyze biological sequences, structures, and data programmatically without needing to be deep experts in every library.
Use the biopython skill to fetch the GenBank record for accession EU490707.
High-intent search queries and answers about installing and using this skill.
Yes, you can programmatically query NCBI Entrez databases. This toolkit provides direct database access to fetch records from PubMed, GenBank, and other NCBI resources, enabling automated data retrieval for genomics pipelines.
The best way to parse and analyze 3D protein structures from PDB files is using structural bioinformatics features that handle PDB and mmCIF formats. It enables detailed structural analysis of macromolecules for structural biology research.
Yes, you can build and visualize phylogenetic trees from sequence analysis data. This toolkit includes phylogenetics features to process homologous proteins and construct evolutionary relationship trees for genomics research.
To integrate BLAST analysis into a computational molecular biology pipeline, this toolkit provides built-in BLAST functionality to find homologous sequences. It enables programmatic construction of automated bioinformatics workflows.
jaechang-hitsParse FASTA, GenBank, and PDB files with Biopython for sequence analysis.
jackspaceParse and write FASTA, GenBank, FASTQ, and PDB files with Biopython.
jasrajtulsiBuild rooted phylogenetic trees from biological sequences using MAFFT, IQ-TREE 2, and ETE3.
Zeyuyang-0420Automate molecular biology tasks with Biopython for sequence and alignment analysis.
