Parse FASTA, GenBank, and PDB files for molecular biology analysis.
npx skills add https://github.com/Yezez9/Research-Agent --skill biopython-yezez9
Please help me install this Agent Skill. Skill: biopython Source: https://github.com/Yezez9/Research-Agent/tree/main/scientific-skills/biopython Command: npx skills add https://github.com/Yezez9/Research-Agent --skill biopython-yezez9
This Skill simplifies complex computational molecular biology tasks, enabling efficient analysis of biological sequences, structures, and evolutionary relationships.
Use the biopython skill to download the GenBank record for accession number EU490707.
High-intent search queries and answers about installing and using this skill.
To parse and manipulate biological sequences, you can use this toolkit to read FASTA and GenBank file formats, perform sequence manipulation on DNA, RNA, and proteins, and calculate genomic metrics like GC content.
Yes, you can query NCBI Entrez databases programmatically to retrieve GenBank records, search PubMed literature, and download specific accession numbers directly for downstream computational molecular biology analysis.
Analyzing 3D protein structures is achieved by parsing PDB and mmCIF structural file formats to extract atomic coordinates and perform structural bioinformatics computations on the macromolecular data.
Building and visualizing phylogenetic trees involves processing sequence alignments to infer evolutionary relationships, generating tree structures that represent phylogenetics for downstream biological interpretation.
Yes, the toolkit supports advanced sequence analysis features including identifying potential open reading frames (ORFs), finding sequence motifs, and performing population genetics calculations on genomic data.
Generating genome diagrams requires processing annotated sequence data to create visual representations of genomic features, enabling efficient visual analysis of complex molecular biology data.
yf8578Parse FASTA, GenBank, and PDB files for molecular biology analyses.
robinbarvaagManipulate, analyze, and visualize phylogenetic trees in Newick, NHX, and PhyloXML formats.
robinbarvaagPerform computational molecular biology tasks with Python for sequence analysis and file parsing.
Imad-OuteAnalyze DNA, RNA, and protein sequences with alignment and phylogenetic tree construction.
