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biorxiv-database

Query the bioRxiv API for preprint metadata and PDF links.

75|7|Updated Feb 14, 2026
Search Tags:#pdf#search#metadata#preprints#biorxiv#literature-review#doi
One-click install
npx skills add https://github.com/jiaxiaojunQAQ/SkillJect --skill biorxiv-database-jiaxiaojunqaq
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: biorxiv-database
Source: https://github.com/jiaxiaojunQAQ/SkillJect/tree/main/data/skills_sample/biorxiv-database
Command: npx skills add https://github.com/jiaxiaojunQAQ/SkillJect --skill biorxiv-database-jiaxiaojunqaq

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires requests, and includes scripts (resource) components.

What problem does it solve?

bioRxiv-database helps researchers quickly locate preprints on specified topics, fetch structured metadata (titles, abstracts, DOIs, authors, dates) and access PDF links to support literature reviews and evidence synthesis.

Core Features & Use Cases

  • Search by keywords, authors, date ranges, and category filters to gather relevant preprints.
  • Retrieve comprehensive metadata and download links for downstream analysis and reporting.
  • Use Case: Build a focused set of papers on CRISPR in genomics for a systematic literature review.

Quick Start

Run a keyword search for CRISPR within genomics for the last year and export results to JSON.

Frequently Asked Questions about biorxiv-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I retrieve bioRxiv preprint metadata for a literature review?▼

To retrieve bioRxiv preprint metadata, search by keywords, authors, date ranges, or categories. The tool queries the bioRxiv API and returns structured JSON containing titles, abstracts, DOIs, and author information for literature reviews.

What is the best way to search bioRxiv preprints by category and date range?▼

Searching bioRxiv preprints supports keyword, author, and date-range queries with optional category filters. Results include comprehensive metadata and PDF links, handling API pagination and rate limiting automatically to return consistent JSON.

Can I get PDF links and DOIs when searching bioRxiv preprints?▼

Yes, searching bioRxiv preprints provides structured JSON with titles, abstracts, DOIs, and direct PDF links. This allows you to access download links and comprehensive metadata for downstream analysis and reporting tasks.

Does the bioRxiv API search tool require live internet access to query preprints?▼

Yes, querying bioRxiv preprints requires live access to the bioRxiv API. The tool depends on the requests library to handle API calls, manage pagination and rate limiting, and deliver structured metadata results.

What limitations exist when fetching bioRxiv metadata through API queries?▼

Fetching bioRxiv metadata is subject to API rate limiting and pagination constraints. You need live internet access to query the bioRxiv API, and results are returned in a structured JSON schema suitable for downstream processing.

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