Unify bioinformatics database lookups and identifier mapping across proteins, genes, pathways, and compounds.
npx skills add https://github.com/dralkh/seerai --skill bioservices-dralkh
Please help me install this Agent Skill. Skill: bioservices Source: https://github.com/dralkh/seerai/tree/main/skills/bioservices Command: npx skills add https://github.com/dralkh/seerai --skill bioservices-dralkh
This Skill removes the friction of jumping between bioinformatics services by centralizing protein, gene, pathway, compound, interaction, and ontology lookups into one consistent workflow.
Ask the bioservices skill to analyze a protein or compound of interest and return the best-matched identifiers, pathways, interactions, and annotations in a concise research summary.
High-intent search queries and answers about installing and using this skill.
To cross-link protein identifiers, the Skill unifies database lookups across UniProt and KEGG, retrieving sequences, annotations, and pathway context in a single workflow. It maps identifiers and finds related pathways without jumping between separate services.
The best way to convert compound identifiers is by using the centralized lookup workflow to cross-reference small molecules between KEGG, ChEBI, and ChEMBL. This ensures robust identifier mapping for compound research without manual database navigation.
Yes, you can run batch identifier conversion for genes and proteins. The workflow supports systematic research tasks like batch mapping and protein interaction discovery with robust error handling and chunked requests to manage large query volumes.
NCBI BLAST submissions require Python 3.9–3.12, internet access to external biological APIs, and a configured NCBI_EMAIL environment variable. These prerequisites are necessary to execute sequence search queries through the external service.
To retrieve protein interactions and Gene Ontology terms, the workflow queries PSICQUIC for interaction discovery and QuickGO for ontology annotations. It consolidates these results with sequence data to provide a concise research summary for the target.
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