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biowasm-compile

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Compile bioinformatics tools to WebAssembly

Software Engineering#bioinformatics#client-side#compilation#webassembly#emscripten#biocomputing
Authorhappykhan
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill simplifies the complex process of compiling bioinformatics C/C++ tools into WebAssembly (WASM) format, enabling them to run directly in web browsers.

Core Features & Use Cases

  • WASM Compilation: Compiles genomics tools (like SKESA, Mash, minimap2, samtools) to WebAssembly using Emscripten.
  • Browser-Based Pipelines: Facilitates running bioinformatics tools client-side for platforms like GenomicX, eliminating server-side dependencies.
  • Use Case: You need to integrate a command-line genomics tool into a web application. Use this Skill to generate the necessary compile.sh script and WASM output (.js and .wasm files).

Quick Start

Use the biowasm-compile skill to generate a compile.sh script for compiling the 'mash' tool to WebAssembly.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: biowasm-compile
Download link: https://github.com/happykhan/biowasm-compile-skill/archive/main.zip#biowasm-compile

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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