bip

Guide bip CLI usage for local paper searches and reference library management.

29|4|Updated Jan 12, 2026

Search Tags:#cli #library #papers #local-first #s2 #bip #asta

Ready to run

npx skills add https://github.com/matsen/bipartite --skill bip

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: bip
Source: https://github.com/matsen/bipartite/tree/main/skills/bip
Command: npx skills add https://github.com/matsen/bipartite --skill bip

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Unified guidance for effectively using the bip CLI to search papers, manage the local library, and explore literature via S2/ASTA.

Core Features & Use Cases

Provides local-first search workflows to locate papers efficiently.
Guides library management tasks such as adding, exporting, and syncing references.
Offers best-practice usage for exploring literature with S2 and ASTA, including when to query locally vs externally.

Quick Start

Run bip search 'phylogenetics' --human to see local results.

Frequently Asked Questions about bip

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I search for research papers locally using the bip CLI?▼

Run bip search 'query' --human to locate papers locally. The bip CLI enforces a local-first policy, ensuring searches query your local reference library before attempting any external requests.

How do I manage my local reference library with the bip CLI?▼

You can manage your local reference library by using bip CLI commands to add, export, and sync references. Guidance covers library maintenance workflows to keep your local collection organized and up-to-date.

When should I use external S2 or ASTA queries instead of local searches?▼

External S2 or ASTA queries are optional and require explicit permission, used only when local searches lack needed literature. The bip CLI enforces a local-first policy to prioritize local library results before external exploration.

What are the safety rules for using bip CLI in laboratory research tasks?▼

The bip CLI enforces clear safety rules including a strict local-first policy and permission-based external queries. This ensures reliable command usage and accurate guidance for typical laboratory research tasks without unintended external access.

Can I export references from my local library using the bip CLI?▼

Yes, the bip CLI supports library management tasks including exporting references. You can export your local reference collection as part of the library maintenance workflows provided by the guidance.

Does bip CLI work without any external dependencies?▼

Yes, the bip CLI operates with no dependencies and enforces a local-first policy. Core search and library management tasks function entirely locally, with external S2/ASTA queries being optional and permission-based.