boltz2-nim

Predict 3D biomolecular structures and ligand binding affinities for proteins, DNA, and RNA using NVIDIA NIM microservices.

413|62|Updated Jun 23, 2026
One-click install
npx skills add https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit --skill boltz2-nim
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: boltz2-nim
Source: https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit/tree/main/plugins/bionemo-agent-toolkit/skills/boltz2-nim
Command: npx skills add https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit --skill boltz2-nim

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires requests, and includes references (resource) components.

What problem does it solve?

This skill addresses the complexity of predicting 3D biomolecular structures and binding affinities, which is essential for drug discovery and protein engineering but often requires significant computational expertise.

Core Features & Use Cases

  • Structure Prediction: Generate high-accuracy 3D models for proteins, DNA, RNA, and their complexes.
  • Affinity Scoring: Estimate binding affinity (pIC50) for protein-ligand complexes to prioritize drug candidates.
  • Use Case: A researcher can input a protein sequence and a ligand SMILES string to predict the binding pose and affinity, accelerating the virtual screening process for new therapeutic molecules.

Quick Start

Use the boltz2-nim skill to predict the structure and binding affinity for the protein sequence provided in the attached file using the hosted NVIDIA API.

Frequently Asked Questions about boltz2-nim

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I predict protein-ligand binding affinity and 3D structures for drug discovery?

To predict protein-ligand binding affinity and 3D structures for drug discovery, you can input a protein sequence and a ligand SMILES string to generate high-accuracy 3D models and estimate pIC50 binding affinity scores.

Can I predict 3D biomolecular structures for DNA and RNA complexes using NVIDIA NIM?

Yes, you can predict 3D biomolecular structures for DNA, RNA, multi-chain assemblies, and protein complexes using NVIDIA NIM microservices, which support complex modeling scenarios including custom MSA integration.

Do I need NGC API credentials to run protein folding and docking predictions?

Yes, you need valid NGC API credentials to run protein folding and docking predictions via hosted inference, or you must configure a local Docker environment for localized deployment.

What's the best way to estimate pIC50 scores for virtual screening of therapeutic molecules?

The best way to estimate pIC50 scores for virtual screening of therapeutic molecules is to use a microservice that calculates binding affinity from protein sequences and ligand SMILES strings, accelerating the prioritization of drug candidates.

Does biomolecular structure prediction with custom MSA integration require significant computational expertise?

Biomolecular structure prediction with custom MSA integration traditionally requires significant computational expertise, but this skill abstracts the complexity to generate high-accuracy 3D models directly.

Why use NVIDIA NIM microservices for protein-ligand docking instead of other tools in the same category?

Using NVIDIA NIM microservices for protein-ligand docking provides a streamlined approach to generate high-accuracy 3D models and affinity scores, reducing the computational setup complexity typically required by other tools in the same category.