Manage dnadesign bioinformatics workloads on the BU SCC cluster.
npx skills add https://github.com/e-south/dnadesign --skill bu-scc-ops
Please help me install this Agent Skill. Skill: BU SCC Ops Source: https://github.com/e-south/dnadesign/tree/main/docs/hpc/skills/bu_scc_ops Command: npx skills add https://github.com/e-south/dnadesign --skill bu-scc-ops
This Skill simplifies and standardizes the process of running dnadesign bioinformatics workloads on the BU SCC (High-Performance Computing) cluster, ensuring efficient resource utilization and predictable job execution.
qrsh) and batch job submissions (qsub) for various dnadesign tools.Use the BU SCC Ops skill to submit a DenseGen batch job with 16 CPU cores and 8GB of memory per core.
High-intent search queries and answers about installing and using this skill.
This Skill submits batch jobs on the BU SCC by orchestrating qsub commands and selecting appropriate scheduler resources like CPU, GPU, memory, and walltime based on your specific dnadesign workload type.
Yes, you can run interactive sessions on the BU SCC. This Skill facilitates qrsh sessions for dnadesign tools, allowing you to dynamically allocate resources and execute tasks directly on compute nodes.
Resource management for Evo2 inference on HPC clusters involves selecting appropriate GPU requirements, memory, and walltime. This Skill automates that allocation and loads necessary modules for efficient batch processing.
Preflight validation checks are needed before submitting long-running batch jobs to validate configurations and event sources, ensuring job integrity and preventing unpredictable outcomes or wasted SCC resources.
Yes, this Skill supports DenseGen workloads. You can specify exact resource requirements such as 16 CPU cores and 8GB of memory per core when configuring and submitting your batch job.
aws-samplesDeploys AWS prerequisite stacks via make after validating .env and credentials.
InternScienceParse Gaussian gjf input files and convert them to XYZ format.
yale-som-hpcExecute R scripts on the Yale SOM HPC cluster with Slurm and renv.
ammawlaGuide selection, configuration, and execution of ENCODE genomics pipelines across compute environments.