bulk-rna-expression
CommunityStreamline bulk RNA-seq expression workflows.
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Bulk RNA-seq projects produce large count matrices that require careful normalization, quality control, and transformation before downstream analysis. This Skill provides a Python-first workflow to produce analysis-ready expression matrices and QC artifacts from counts and metadata.
Core Features & Use Cases
- Ingest count matrices and sample metadata; perform library size checks, gene-detection metrics, and normalization.
- Generate QC plots and PCA/clustering summaries to support downstream differential expression or pathway analyses.
- Ensure separation of raw inputs from processed outputs for reproducibility and auditability.
Quick Start
Provide a count matrix and sample metadata, then run the workflow to obtain a normalized matrix and QC reports.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bulk-rna-expression Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#bulk-rna-expression Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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