bulk-rnaseq-gsea-master-tables
CommunityUnify GSEA outputs into a single master table.
Authortony-zhelonkin
Version1.0.0
Installs0
System Documentation
What problem does it solve?
GSEA results from multiple sources are normalized and assembled into a unified CSV schema suitable for downstream visualization and reproducible reporting. It bridges R-based normalization with Python-based visualization by producing a stable master_gsea_table.csv and enabling idempotent appends for new databases or modules.
Core Features & Use Cases
- Normalize gseaResult objects into a 13-column master schema and append to the master table
- Support derived tables such as master_gsea_significant.csv and gsea_summary_stats.csv
- Provide idempotent update patterns to avoid duplicates across re-runs
- Assist debugging column-name mismatches between R and Python consumers
Quick Start
Load checkpoints and run the master table assembly to produce master_gsea_table.csv.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bulk-rnaseq-gsea-master-tables Download link: https://github.com/tony-zhelonkin/SciAgent-toolkit/archive/main.zip#bulk-rnaseq-gsea-master-tables Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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