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bulk-rnaseq-gsea-visualization

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Publish GSEA visuals and explore pathways

Data & Analytics#visualization#interactive-dashboard#gsea#rnaseq#pathway-explorer#master-tables
Authortony-zhelonkin
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Visualizes completed GSEA analyses from RNA-seq studies and bridges results to publication-ready figures and an interactive exploration dashboard.

Core Features & Use Cases

  • Publication-quality GSEA visualizations (R-based dotplots, NES bars, running sums)
  • Interactive pathway explorer dashboard (Python) fed by master_gsea_table.csv
  • Cross-database pooling and per-database visualization workflows to support quick investigation and reporting
  • Easy integration with existing RNA-seq pipelines to generate figures and insights from results

Quick Start

Run the R-based plotting workflow to generate publication-quality figures from your GSEA results, or launch the Python pathway explorer to interactively explore master GSEA tables.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bulk-rnaseq-gsea-visualization
Download link: https://github.com/tony-zhelonkin/SciAgent-toolkit/archive/main.zip#bulk-rnaseq-gsea-visualization

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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