bulk-rnaseq-pathway-explorer
CommunityInteractive pathway dashboards from master data
Authortony-zhelonkin
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Turning unified RNaseq results into self-contained interactive HTML dashboards enables researchers to explore and share pathway insights without requiring specialized tooling or locally installed software.
Core Features & Use Cases
- Converts master_unified.csv (or the legacy trio: master_gsea_table.csv, master_tf_activities.csv, and master_progeny_activities.csv) into standalone interactive HTML dashboards that can be opened in any browser.
- Produces per-contrast HTML files (and an index) with embedded data, supports filtering by database and entity type, and renders interactive Plotly visualizations for pathway exploration.
- Ideal for collaborating with non-R users, debugging pathway results, or publishing interactive analyses from RNaseq experiments.
Quick Start
Run the pathway-explorer CLI on your project using the master input to generate the interactive HTML dashboard.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bulk-rnaseq-pathway-explorer Download link: https://github.com/tony-zhelonkin/SciAgent-toolkit/archive/main.zip#bulk-rnaseq-pathway-explorer Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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