by-research

What problem does it solve?

BY Research automates comprehensive, cross-database target research for antibody/binder campaigns, consolidating data from PDB, UniProt, SAbDab and PubMed into an actionable evidence package to reduce manual research overhead.

Core Features & Use Cases

• 8-phase pipeline (SCOPE → PLAN → RETRIEVE → TRIANGULATE → SYNTHESIZE → CRITIQUE → REFINE → PACKAGE) with persistent memory and quality gates.
• Multi-source data integration from PDB, UniProt, SAbDab, PubMed, bioRxiv to build target profiles, evidence maps, and design inputs.
• Outputs designed to feed downstream orchestration and campaign planning tools (scope.json, sources.json, validated_findings.json, critique.json, research.md, and design_recommendation.json).
• Resume and auditability through checkpoints and a race-safe progression log for mid-session recovery.

Quick Start

Initiate a new design campaign by running the BY Research workflow to generate a target research plan.