callingcards

What problem does it solve?

This Skill removes the guesswork from running the nf-core/callingcards workflow so you can process Calling Cards sequencing data with the correct inputs, parameters, and outputs every time.

Core Features & Use Cases

• Samplesheet-driven execution: Launches the pipeline from a structured input file that ties each sample to its reads and barcode details.
• Reference-aware processing: Supports mammalian and yeast runs with the right genome or annotation inputs for alignment and downstream analysis.
• Reproducible QC and reporting: Produces organized results, pipeline metadata, and MultiQC summaries for review and sharing.

Quick Start

Tell the assistant to run the callingcards skill on your samplesheet, choose the organism type, and write the results to your desired output directory.