cell-communication
CommunityInfer cell signaling from ligand-receptor data.
Data & Analytics#ligand-receptor#single-cell#network-visualization#spatial-transcriptomics#cell-cell-communication#interaction-tables#qc-artifacts
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Workflow to infer ligand-receptor signaling between cells from single-cell or spatial data, producing interpretable interaction outputs and cautious interpretation.
Core Features & Use Cases
- Compute interaction scores for sender-to-receiver cell pairs or spatial neighborhoods
- Generate interaction tables, sender-receiver summaries, and pathway-style visualizations
- Suitable for scRNA-seq and spatial transcriptomics analyses with optional ligand-receptor references
Quick Start
Provide an annotated single-cell or spatial object, a ligand-receptor resource, and metadata to initiate the workflow.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
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Please help me install this Skill: Name: cell-communication Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#cell-communication Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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