cellprofiler-pipelines
CommunityBuild reproducible image analysis pipelines with CellProfiler
Education & Research#feature extraction#segmentation#image analysis#high-content screening#cellProfiler
Authorpradyumnasagar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill addresses the challenge of creating and executing reproducible image analysis pipelines for cell and nucleus segmentation, illumination correction, feature extraction, and high-content screening assays using CellProfiler.
Core Features & Use Cases
- Reproducible Pipelines: Automate and standardize image analysis workflows.
- Cell/Nuclei Segmentation: Segment cells and nuclei from images.
- Feature Extraction: Extract and measure features from segmented objects.
- High-Content Screening: Perform high-content screening assays.
- Use Case: For a researcher analyzing fluorescence microscopy images, this Skill can automate the segmentation of cells, extraction of morphological features, and generation of per-cell feature tables for further analysis.
Quick Start
Run the pipeline for cell segmentation and feature extraction on your images using the provided CellProfiler pipeline file.
Dependency Matrix
Required Modules
cellprofiler
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: cellprofiler-pipelines Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#cellprofiler-pipelines Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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