chem-data-extractor

To extract chemical characterization data from supplementary PDFs, you instruct the tool to process a single file or a folder of PDFs and Markdown files, which parses fields like NMR and HRMS into strict machine-readable JSON.

Chemical data extraction from supplementary materials captures name, physical state, yield percent, melting point, optical rotation, HPLC, NMR (1H, 13C, 19F), HRMS, and racemic notes into structured JSON.

Batch processing for chemical data extraction works by instructing the tool to parse a folder of multiple PDFs and Markdown files, automatically extracting all supported compound characterization fields into a single JSON output.

Yes, you can extract chemical data for individual single-compound entries or perform whole-document extraction to capture all compounds found in chemistry supplementary materials.

Yes, chemical data extraction supports parsing NMR (1H, 13C, 19F) and HRMS data from Markdown files, converting the unstructured literature text into strict structured JSON for downstream analysis.

Automated chemical data extraction from literature is limited to parsing supported fields like NMR, HRMS, HPLC, melting points, optical rotation, and yield data from PDFs and Markdown files, relying on extraction scripts to generate JSON.