chem-sorption-relax
OfficialPrepare porous frameworks for sorption studies.
Education & Research#MLIP relaxation#supercell generation#porous frameworks#MOF preprocessing#periodic boundary artifacts#sorption simulation
Authorlearningmatter-mit
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Porous framework unit cells (MOFs/COFs) often produce unphysical gas self-interactions across periodic boundaries during sorption simulations, so you need a reliable way to expand the cell and then relax the resulting structure before running downstream calculations.
Core Features & Use Cases
- Minimum interplanar distance supercell building: Automatically checks whether the structure’s interplanar spacing meets a threshold (commonly ≥ 12 Å) and repeats the unit cell when it does not.
- MLIP-based structural relaxation: Relaxes the (possibly expanded) framework using a supported MLIP backend (via provided relaxation tooling) to produce a stable geometry.
- Downstream-ready outputs: Produces relaxed CIFs that can be used directly for sorption workflows such as Widom insertion and GCMC.
Quick Start
Run the supercell check-and-build and then relax the framework using an MLIP model so you can feed the relaxed CIF into sorption simulations.
Dependency Matrix
Required Modules
asenumpy
Components
scripts
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Please help me install this Skill: Name: chem-sorption-relax Download link: https://github.com/learningmatter-mit/AtomisticSkills/archive/main.zip#chem-sorption-relax Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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