chem-sorption-relax

Official

Prepare porous frameworks for sorption studies.

Authorlearningmatter-mit
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Porous framework unit cells (MOFs/COFs) often produce unphysical gas self-interactions across periodic boundaries during sorption simulations, so you need a reliable way to expand the cell and then relax the resulting structure before running downstream calculations.

Core Features & Use Cases

  • Minimum interplanar distance supercell building: Automatically checks whether the structure’s interplanar spacing meets a threshold (commonly ≥ 12 Å) and repeats the unit cell when it does not.
  • MLIP-based structural relaxation: Relaxes the (possibly expanded) framework using a supported MLIP backend (via provided relaxation tooling) to produce a stable geometry.
  • Downstream-ready outputs: Produces relaxed CIFs that can be used directly for sorption workflows such as Widom insertion and GCMC.

Quick Start

Run the supercell check-and-build and then relax the framework using an MLIP model so you can feed the relaxed CIF into sorption simulations.

Dependency Matrix

Required Modules

asenumpy

Components

scripts

💻 Claude Code Installation

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Please help me install this Skill:
Name: chem-sorption-relax
Download link: https://github.com/learningmatter-mit/AtomisticSkills/archive/main.zip#chem-sorption-relax

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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