choosing-openmed-models

Select OpenMed clinical or biomedical models via structured ModelQuery filters.

5.0k|615|Updated Oct 4, 2025
One-click install
npx skills add https://github.com/maziyarpanahi/openmed --skill choosing-openmed-models
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: choosing-openmed-models
Source: https://github.com/maziyarpanahi/openmed/tree/main/skills/choosing-openmed-models
Command: npx skills add https://github.com/maziyarpanahi/openmed --skill choosing-openmed-models

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This Skill helps you select an appropriate OpenMed clinical or biomedical model without relying on outdated hardcoded model lists, reducing trial and error when matching a task, language, model size, or entity type.

Core Features & Use Cases

  • Category Discovery: Browse models across clinical, biomedical, disease, oncology, privacy, and other supported categories.
  • Task and Language Matching: Find PII models by language, identify default de-identification models, and filter models by task, size, tier, license, or parameter count.
  • Metadata Validation: Inspect labels, model families, supported languages, parameter counts, licenses, formats, and recommended confidence thresholds before loading.
  • Use Case: For Spanish clinical notes containing disease entities and protected health information, identify a suitable Spanish PII model and a disease model, verify their labels and metadata, then pass the selected model identifiers to the loading or extraction workflow.

Quick Start

Ask the OpenMed skill to find the best model for your clinical task, language, and device constraints, and explain why it fits.

Frequently Asked Questions about choosing-openmed-models

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I choose the right biomedical NER model for clinical notes?

To choose the right biomedical NER model, you must match the clinical note's language and target disease entities against the model registry's supported labels, metadata, and confidence thresholds before loading.

What is the best way to find a clinical model for de-identification in Spanish?

Finding a clinical model for de-identification in Spanish requires querying the model registry with task and language filters to locate PII detection models, then verifying Spanish language support and entity labels.

How do I filter clinical models by task, size, and license?

You filter clinical models by applying structured ModelQuery filters during runtime registry queries, allowing you to narrow down model discovery by specific task type, parameter count, tier, and license format.

Can I validate model labels and metadata before loading a biomedical model?

You can validate model labels and metadata before loading a biomedical model by inspecting the registry's model metadata to verify supported languages, parameter counts, entity labels, and recommended confidence thresholds.

Does OpenMed support privacy and PII detection workflows?

OpenMed supports privacy and PII detection workflows by enabling model discovery and comparison across privacy categories, identifying default de-identification models, and validating PII entity labels through runtime registry queries.

What are the limitations of using hardcoded model lists for medical NLP tasks?

Hardcoded model lists for medical NLP tasks limit accuracy because they become outdated, whereas querying a runtime registry ensures you compare current clinical models, validate supported languages, and check metadata dynamically.