cite-encode

Generate BibTeX and RIS citations for ENCODE datasets and publications.

26|5|Updated Mar 8, 2026

Search Tags:#bibliography #reference #citation #publication #ENCODE #data attribution

Ready to run

npx skills add https://github.com/ammawla/encode-toolkit --skill cite-encode

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: cite-encode
Source: https://github.com/ammawla/encode-toolkit/tree/main/plugin/skills/cite-encode
Command: npx skills add https://github.com/ammawla/encode-toolkit --skill cite-encode

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill provides accurate and standardized citations for ENCODE data, publications, and related resources, ensuring proper attribution and reproducibility in research work.

Core Features & Use Cases

Generate citations for specific ENCODE experiments and publications in formats like BibTeX and RIS.
Create comprehensive reference lists from tracked experiments, including associated publications.
Assist in drafting Data Availability statements citing ENCODE datasets used in studies.
Support writing acknowledgment sections recognizing data generation efforts by ENCODE labs.
Quickly compile a key resources table listing all relevant ENCODE accessions with metadata for manuscripts.

Quick Start

Generate a BibTeX citation list for all experiments used in your project.

Frequently Asked Questions about cite-encode

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I generate a BibTeX citation for ENCODE datasets?▼

Yes, you can create comprehensive reference lists from tracked ENCODE experiments. The Skill compiles these references and includes associated publications to ensure proper data attribution for research work.

What is the best way to write a Data Availability statement for ENCODE data?▼

Yes, this Skill supports writing acknowledgment sections for manuscripts. It helps you recognize the data generation efforts by ENCODE labs by creating standardized citations for the relevant resources.

Can I compile a key resources table listing ENCODE accessions with metadata?▼

The Skill creates accurate and standardized citation entries for ENCODE datasets, publications, and resources. It ensures proper attribution and reproducibility in scientific manuscripts and grant proposals.

How do I create RIS formatted citations for ENCODE publications?▼

To create RIS formatted citations for ENCODE publications, you provide the publication identifiers. The Skill generates standardized citation entries in RIS format to support proper attribution in research work.