clinical-decision-support

Generate publication-ready LaTeX/PDF clinical decision support documents from biomarker data.

Updated Apr 26, 2026
One-click install
npx skills add https://github.com/GongXLiang/plot-study --skill clinical-decision-support-gongxliang
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: clinical-decision-support
Source: https://github.com/GongXLiang/plot-study/tree/main/.claude/plugins/cache/claude-scientific-writer/claude-scientific-writer/2f80d2aed0e6/.claude/skills/clinical-decision-support
Command: npx skills add https://github.com/GongXLiang/plot-study --skill clinical-decision-support-gongxliang

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires pandas, numpy, scipy, lifelines, matplotlib, scikit-learn, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

The Clinical Decision Support (CDS) unit provides automated generation of population-level decision documents for pharmaceutical and clinical research teams, enabling consistent, publication-ready analyses and guidelines.

Core Features & Use Cases

  • Biomarker-supported Patient Cohort Analysis: stratify cohorts by genomic, expression, or clinical markers and compare outcomes using Kaplan-Meier survival analyses, HRs, and subgroup forest plots.
  • Treatment Recommendation Reports: synthesize evidence, apply GRADE, and generate TikZ flowcharts and clinical algorithms to support guideline development and regulatory submissions.
  • Publication-ready Outputs: LaTeX/PDF templates, FIGURES and tables ready for manuscript submission, internal reports, or regulatory dossiers.

Quick Start

Provide a dataset and request a publication-ready CDS document.

Frequently Asked Questions about clinical-decision-support

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I generate clinical decision support reports from biomarker data?

To generate clinical decision support reports from biomarker data, you provide a structured dataset to stratify patient cohorts and the workflow outputs publication-ready LaTeX/PDF documents with figures and tables.

Can I use lifelines for Kaplan-Meier survival analysis in a cohort stratification workflow?

Yes, lifelines is supported for Kaplan-Meier survival analysis to compare outcomes across biomarker-stratified cohorts, producing subgroup forest plots and hazard ratios for clinical decision support documents.

What is the best way to apply GRADE evidence grading for treatment recommendation guidelines?

The best way to apply GRADE evidence grading for treatment guidelines is through systematic evidence synthesis, which evaluates biomarker data and generates TikZ flowcharts and clinical algorithms for regulatory submissions.

Do I need LaTeX and TikZ to produce publication-ready clinical guideline documents?

Yes, LaTeX and TikZ are required to produce publication-ready clinical guideline documents, as the workflow renders decision algorithms and formatted tables directly into LaTeX/PDF templates for manuscript submission.

Does this clinical decision support workflow handle cohort analysis for cardiology and neurology?

Yes, the clinical decision support workflow handles cohort analysis for cardiology and neurology, alongside oncology, delivering population-level biomarker-supported stratification and outcome comparisons for these therapeutic areas.

What are the limitations of using pandas and scipy for evidence grading in clinical decision support?

The workflow uses pandas, scipy, and scikit-learn for data processing but requires pre-structured biomarker inputs and systematic evidence synthesis to function, meaning unstructured clinical data cannot be processed without prior formatting.