clinical-decision-support

Generate LaTeX/PDF clinical decision support reports from biomarker-stratified cohort analyses and GRADE evidence grading.

4|Updated Mar 2, 2026
One-click install
npx skills add https://github.com/shushuzn/Rairos --skill clinical-decision-support-shushuzn
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: clinical-decision-support
Source: https://github.com/shushuzn/Rairos/tree/main/skills/clinical-decision-support
Command: npx skills add https://github.com/shushuzn/Rairos --skill clinical-decision-support-shushuzn

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires python, pandas, numpy, scipy, lifelines, matplotlib, pyyaml, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

It streamlines the creation of publication-ready clinical decision support documents by turning biomarker-stratified cohort data and guideline logic into consistently structured LaTeX/PDF reports.

Core Features & Use Cases

  • Patient Cohort Analysis: Build biomarker-stratified subgroup tables and outcomes (OS/PFS/ORR/DOR) with survival statistics (Kaplan–Meier, log-rank, hazard ratios).
  • Treatment Recommendation Reports: Produce evidence-graded recommendations using the GRADE framework and decision algorithms with clear decision pathways.
  • Regulatory-leaning Documentation: Apply structured executive summaries, compliance-oriented formatting, and HIPAA de-identification guidance for professional/pharma and clinical research contexts.
  • Mandatory Visual Algorithms: Enforce inclusion of AI-generated scientific schematics (e.g., treatment pathway or biomarker decision flowcharts) to improve interpretability.

Quick Start

Generate a biomarker-stratified patient cohort analysis with survival curves and a GRADE-based treatment recommendation report for your specified disease state and disease population.

Frequently Asked Questions about clinical-decision-support

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I generate a clinical decision support document with survival analysis and GRADE evidence grading?

To generate a clinical decision support document, you input biomarker-stratified cohort data to produce publication-ready LaTeX/PDF outputs. The system automatically calculates survival statistics like Kaplan-Meier curves and hazard ratios, applies GRADE evidence grading, and formats regulatory-style treatment recommendations.

Can I create biomarker stratification reports using Python and pandas for patient cohort analysis?

Yes, you can perform biomarker stratification for patient cohort analysis using Python with pandas and numpy. The workflow processes subgroup data to generate outcomes like OS, PFS, and ORR, outputting structured statistical reports with response and safety summaries.

Does this workflow produce LaTeX PDF reporting with TikZ flowcharts for treatment recommendation algorithms?

Yes, the workflow produces LaTeX PDF reporting featuring TikZ flowcharts for treatment recommendation algorithms. It enforces the inclusion of scientific schematics, mapping biomarker decision pathways and clinical logic into publication-ready visual outputs.

What is the best way to automate regulatory-leaning documentation and HIPAA de-identification for clinical trials?

The best way to automate regulatory-leaning documentation is by transforming cohort analyses and guideline logic into structured reports. This workflow enforces mandatory full-page executive summaries, applies GRADE frameworks, and integrates HIPAA de-identification guidance for clinical research contexts.

Do I need lifelines and scipy installed to calculate hazard ratios and log-rank tests for clinical decision support?

Yes, you need lifelines and scipy installed to calculate hazard ratios and log-rank tests for clinical decision support. These dependencies are required to perform the survival analysis and statistical outcome reporting on biomarker-stratified patient cohorts.