clinical-document-processor

Extract diagnoses, medications, and follow-up actions from clinical documents into markdown.

Updated Feb 20, 2026
One-click install
npx skills add https://github.com/garethdaine/agent --skill clinical-document-processor
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: clinical-document-processor
Source: https://github.com/garethdaine/agent/tree/main/skill-library/skills/clinical-document-processor
Command: npx skills add https://github.com/garethdaine/agent --skill clinical-document-processor

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

This Skill automates the extraction of critical information from unstructured clinical documents, streamlining healthcare workflows and improving data accessibility.

Core Features & Use Cases

  • Structured Data Extraction: Identifies and extracts diagnoses, medications, allergies, and follow-up actions from clinical text.
  • Data Formatting: Organizes extracted information into a standardized markdown format for easy integration into care coordination systems.
  • Use Case: Automatically process a batch of discharge summaries to create a consolidated list of patient medications and follow-up appointments for GP reconciliation.

Quick Start

Use the clinical-document-processor skill to extract diagnoses and medications from the provided discharge summary text.

Frequently Asked Questions about clinical-document-processor

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I extract structured data from unstructured clinical notes?

To extract structured data from clinical notes, process the text to identify and isolate key diagnoses, medications, allergies, and follow-up actions, formatting the outputs into standardized markdown for care coordination workflows.

What is the best way to automate patient data extraction from discharge summaries?

Automating patient data extraction from discharge summaries involves processing the clinical text to automatically identify medications and follow-up appointments, creating a consolidated list for GP reconciliation and care coordination.

Can I process referral letters to identify diagnoses and medications?

Yes, you can process referral letters to identify diagnoses and medications. The clinical document processing extracts critical information from unstructured referral text and organizes it into a standardized markdown format.

Does clinical document processing support languages other than English?

Clinical document processing currently supports English language clinical text only. It requires machine-readable input formats to accurately extract structured data like diagnoses and medications from the provided documentation.

What are the limitations of extracting data from medical notes?

Limitations of extracting data from medical notes include the requirement for machine-readable input formats and support for English language clinical text only, which restricts processing unstructured healthcare documents in other languages.