codon-usage
CommunityAnalyze codon usage for gene expression and heterologous expression design.
Authorpradyumnasagar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill helps users compute codon usage frequencies, RSCU, CAI, and tRNA adaptation, enabling gene expression prediction, heterologous expression design, and comparative genomics.
Core Features & Use Cases
- Codon Usage Analysis: Compute codon usage frequencies and related metrics for genes.
- Gene Expression Prediction: Predict the expression level of genes in different organisms.
- Heterologous Expression Design: Design genes for expression in different host organisms.
- Comparative Genomics: Compare codon usage across different species.
- Use Case: For a gene of interest, use this Skill to determine its codon usage and design a codon-optimized sequence for high expression in a particular host organism.
Quick Start
Run the 'codon_usage' skill to compute the codon usage and CAI for your gene sequence.
Dependency Matrix
Required Modules
biopythondnachiselGeneDesign
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: codon-usage Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#codon-usage Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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