coexpression-for-gene
CommunityDiscover genes co-expressed with a query gene.
AuthorMDhewei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Co-expression for Gene identifies genes whose expression patterns correlate with a query gene across TCGA PanCancer Atlas patient samples and GTEx normal tissues, enabling discovery of functionally related genes and co-expression networks.
Core Features & Use Cases
- Data-driven discovery of gene modules by correlating a query gene with all other genes across selected datasets.
- Supports TCGA pan-cancer analysis via cBioPortal REST API and GTEx with a user-provided expression matrix.
- Outputs include coexpression_results.tsv, top_coexpressed.png, coexpression_network.png, and an optional GO enrichment/summary report.
Quick Start
Provide a gene symbol and dataset options to compute its co-expression across TCGA and GTEx data.
Dependency Matrix
Required Modules
pandasnumpymatplotlibscipyrequests
Components
scripts
💻 Claude Code Installation
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Please help me install this Skill: Name: coexpression-for-gene Download link: https://github.com/MDhewei/bioinfor-claw/archive/main.zip#coexpression-for-gene Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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