community-ecology-ordination
CommunityOrdination and diversity analyses for ecological communities.
Authorbaratadiego
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This skill helps researchers analyze and interpret ecological community data by performing multivariate ordination, diversity metrics, beta diversity partitioning, clustering, and hypothesis testing, enabling reproducible interpretation of community structure.
Core Features & Use Cases
- Ordination (NMDS, PCA/PCoA) to visualize relationships among sites based on species composition.
- Alpha and beta diversity calculations to quantify within-site richness and between-site turnover.
- Beta diversity partitioning (turnover and nestedness) and cluster analyses to identify community patterns.
- Hypothesis testing with PERMANOVA and related dispersion tests to compare groups (e.g., treatments, habitats).
- Species-contribution methods (SIMPER, IndVal) to identify key species driving differences.
- Reproducible workflow with data validation, visualizations, and exportable results.
Quick Start
Load the community-ecology-ordination skill and run a Bray-Curtis NMDS ordination followed by alpha and beta diversity analyses on your species-by-site matrix.
Dependency Matrix
Required Modules
numpypandasmatplotlibscipyscikit-bio
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: community-ecology-ordination Download link: https://github.com/baratadiego/ecological-agent-skills/archive/main.zip#community-ecology-ordination Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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