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End-to-end CNV analysis for sequencing data.

Data & Analytics#bioinformatics#genomics#data-analysis#sequencing#cnv#copy-number
Authorzongtingwei
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Copy-number analysis in sequencing-based assays typically requires stitching together multiple tools, manual integration, and inconsistent reporting. This Skill automates CNV estimation, segmentation, annotation, and visualization to deliver repeatable CNV results.

Core Features & Use Cases

  • Automates generation of CNV segments and gene-level CNV tables from coverage data.
  • Annotates segments to genes and recurrent regions; produces chromosome-level and gene-centric plots.
  • Use cases include tumor-normal and tumor-only analyses, cohort CNV summaries, and reporting-ready outputs.

Quick Start

Provide input coverage or ratio data, target bins, and sample metadata to generate CNV segments, gene-level CNV tables, and CNV plots.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

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Please help me install this Skill:
Name: copy-number
Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#copy-number

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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