cutandrun
CommunityRun CUT&RUN analyses with pinned, validated workflows.
Authordanilomonge
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill removes the guesswork from running nf-core/cutandrun by turning a complex sequencing analysis pipeline into a reproducible, parameter-safe workflow for CUT&RUN, CUT&Tag, and TIPseq data.
Core Features & Use Cases
- End-to-End Pipeline Execution: Runs the full analysis flow from samplesheet validation through alignment, deduplication, normalization, peak calling, and reporting.
- Release-Pinned Reproducibility: Supports selecting specific pipeline releases and records provenance so results can be rerun and audited consistently.
- Bioinformatics Use Cases: Useful for researchers processing protein-DNA interaction assays, generating QC summaries, comparing peak callers, and producing publication-ready outputs.
Quick Start
Ask the assistant to run the cutandrun Skill on your samplesheet and output directory, then choose the appropriate profile and any required pipeline version or reference settings.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: cutandrun Download link: https://github.com/danilomonge/nf-claw/archive/main.zip#cutandrun Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 536,000+ vetted skills library on demand.