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database-lookup

Query REST APIs from 78 public databases for biomedical data and returns raw JSON with endpoints used.

33.0k|3.2k|Updated Oct 19, 2025
Search Tags:#research#database#biomedical#lookup#data-integration#apis
One-click install
npx skills add https://github.com/K-Dense-AI/scientific-agent-skills --skill database-lookup-k-dense-ai
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: database-lookup
Source: https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/scientific-skills/database-lookup
Command: npx skills add https://github.com/K-Dense-AI/scientific-agent-skills --skill database-lookup-k-dense-ai

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

Enables AI agents to locate and query data across 78 public biomedical and related databases via REST APIs, returning raw JSON results along with reference endpoints for reproducibility and verification.

Core Features & Use Cases

  • Cross-database querying: identify relevant databases for a given biological question and fetch raw results with endpoints listed.
  • Reference-backed results: accompany responses with corresponding references and endpoints to facilitate auditability and deeper dives.
  • Use cases: look up PubChem CID for a compound, retrieve NCBI Gene details, fetch Open Targets target-disease associations, or pull COSMIC mutation data for cancer studies.

Quick Start

Look up TP53 in NCBI Gene and retrieve its basic gene information.

Frequently Asked Questions about database-lookup

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I query biomedical databases for gene and protein information via REST APIs?▼

To query biomedical databases via REST APIs, you can target genes, proteins, and pathways across 78 public databases, retrieving raw JSON results along with the exact endpoints used for reproducibility.

What is the best way to retrieve raw JSON results from public databases like PubChem and NCBI Gene?▼

The best way to retrieve raw JSON from databases like PubChem and NCBI Gene is to execute targeted queries that return structured biomedical data alongside reference endpoints for auditability.

Can I look up clinical data and target-disease associations across multiple public databases?▼

Yes, you can look up clinical data and target-disease associations by querying multiple public databases via REST APIs, fetching comprehensive discovery results for cancer studies and other research.

Does cross-database querying return reference endpoints for verification?▼

Yes, cross-database querying returns reference endpoints for verification, accompanying the raw JSON responses with corresponding references to facilitate auditability and deeper research dives.

What types of compounds and mutation data can I fetch using biomedical database lookup?▼

Using biomedical database lookup, you can fetch data on compounds, pathways, patents, and COSMIC mutation data for cancer studies, returning raw JSON results from 78 targeted public databases.

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