dataset-audit

Audit medical imaging datasets and generate ground-truth reports from file headers.

Updated Apr 14, 2026
One-click install
npx skills add https://github.com/BraveDistribution/claude-skills --skill dataset-audit
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: dataset-audit
Source: https://github.com/BraveDistribution/claude-skills/tree/main/dataset-audit
Command: npx skills add https://github.com/BraveDistribution/claude-skills --skill dataset-audit

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires nibabel, pydicom, numpy, trimesh, and includes scripts (resource) components.

What problem does it solve?

This Skill outputs ground-truth reports detailing the actual contents of medical imaging datasets, preventing misinterpretations by verifying headers, file types, and documentation.

Core Features & Use Cases

  • Reconciles on-disk contents with official dataset documentation to report modality, dimensionality, views, frames, sensors, and subjects.
  • Produces structured audit results (NIfTI, DICOM, meshes, contours) to support reproducibility and data governance.
  • Use Case: Before a study, audit a dataset directory to confirm available data types and annotations.

Quick Start

Run the audit on a dataset directory to generate a ground-truth report.

Frequently Asked Questions about dataset-audit

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I audit a medical imaging dataset to confirm its actual contents?

You can audit a medical imaging dataset by running this Skill on a local directory or archive to read actual file headers and cross-reference official documentation, producing a ground-truth report of modalities, dimensions, and subject counts.

Does this dataset audit tool support 3D and 3D+t modalities like MRI and CT?

Yes, this dataset audit tool supports 2D, 3D, and 3D+t data across MRI, CT, and US modalities, verifying dimensions, views, temporal frames, and segmentations to ensure accurate interpretation before publication.

Can I validate ground-truth segmentations and meshes in my medical imaging archive?

You can validate ground-truth segmentations and meshes by inspecting contour data and cross-referencing official dataset documentation, ensuring available annotations and data types are accurately reported before starting a study.

Do I need specific Python dependencies to inspect DICOM and NIfTI files?

Yes, you need specific Python dependencies including pydicom, nibabel, numpy, and trimesh to read actual DICOM and NIfTI file headers and inspect mesh data during the dataset auditing process.

Why does my medical imaging dataset audit show different dimensions than the documentation?

Your medical imaging dataset audit may show different dimensions because this Skill reads actual file headers rather than relying on documentation, revealing true on-disk contents to prevent misinterpretations and ensure data governance.