Convert BAM files to bigWig and visualize NGS data with deepTools.
npx skills add https://github.com/tassiovale/claude-code-kit --skill deeptools-tassiovale
Please help me install this Agent Skill. Skill: deeptools Source: https://github.com/tassiovale/claude-code-kit/tree/main/skills/deeptools Command: npx skills add https://github.com/tassiovale/claude-code-kit --skill deeptools-tassiovale
This Skill provides comprehensive analysis and visualization capabilities for Next-Generation Sequencing (NGS) data, enabling users to perform quality control, normalization, sample comparison, and generate publication-quality visualizations.
Use the deepTools skill to generate a heatmap around the TSS for the ChIP-seq data in 'chip-seq_data.bam'.
High-intent search queries and answers about installing and using this skill.
This Skill converts BAM alignments to bigWig or bedGraph files using deepTools, enabling downstream NGS data visualization and quality control for ChIP-seq, RNA-seq, and ATAC-seq experiments.
Yes, this Skill performs ChIP-seq quality control using deepTools by assessing sequencing depth, executing PCA, and generating fingerprints to evaluate sample quality and identify enriched regions.
This Skill generates heatmaps and profiles around TSS for RNA-seq experiments by leveraging deepTools to create publication-quality enrichment plots for genomic features.
This Skill normalizes and compares multiple NGS samples by applying deepTools normalization functions and performing correlation analysis across ChIP-seq, RNA-seq, and ATAC-seq experiments.
Yes, this Skill requires Python >3.8 and deepTools to execute ATAC-seq data analysis, including BAM to bigWig conversion, quality control, and visualization operations.
galeepAutomate NGS data processing and analysis with the deepTools suite.
BIsnake2001Identify condition-dependent genomic regions from count data using DESeq2.
biomaps-infraConvert BAM files to normalized bigWig tracks for NGS analysis.
Zeyuyang-0420Perform quality control, normalization, comparison, and visualization of NGS data with deepTools.
