denovotranscript
CommunityAssemble RNA-seq transcripts with confidence.
Authordanilomonge
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill removes the guesswork from running nf-core/denovotranscript by turning a bulk RNA-seq samplesheet into a reproducible de novo transcriptome assembly workflow with clear input, output, and parameter guidance.
Core Features & Use Cases
- End-to-end RNA-seq assembly: Handles quality control, trimming, assembly, redundancy reduction, pseudoalignment, and quantification in one validated workflow.
- Schema-driven parameter guidance: Surfaces required inputs, allowed values, defaults, and constraints so runs stay consistent and fail fast on invalid settings.
- Research workflow support: Useful for assembling transcriptomes from paired-end short reads, comparing release versions, and inspecting reports and provenance for reproducibility.
Quick Start
Ask the denovotranscript skill to run nf-core/denovotranscript for my samplesheet and output directory using an appropriate execution profile.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: denovotranscript Download link: https://github.com/danilomonge/nf-claw/archive/main.zip#denovotranscript Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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