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depmap-download-data

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Download only the DepMap datasets you need.

Data & Analytics#cache#manifest#expression#download#datasets#data-preparation#depmap
AuthorMDhewei
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Inspect DepMap releases and files, then download only the datasets required for downstream analysis. The agent should choose parameters dynamically based on the user's request instead of relying on one fixed command.

Core Features & Use Cases

  • Listing available DepMap releases and files in a chosen release.
  • Downloading selective datasets (expression, mutations, copy_number, essentiality, metadata) with caching and manifest support.
  • Reusing cached files and overwriting when needed, plus optional manifest describing outputs.

Quick Start

Ask an AI assistant to download the needed DepMap datasets for a specific release and produce a manifest for downstream steps.

Dependency Matrix

Required Modules

requests

Components

scripts

💻 Claude Code Installation

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Please help me install this Skill:
Name: depmap-download-data
Download link: https://github.com/MDhewei/bioinfor-claw/archive/main.zip#depmap-download-data

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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