dicom-series-to-volume
CommunityConvert a single-series DICOM folder to HU NIfTI.
Authorsayalinvidia
Version1.0.0
Installs0
System Documentation
What problem does it solve?
The skill automates engineering verification of single-series DICOM data by converting a directory of CT DICOM slices into a HU-scaled NIfTI volume with an affine pose and a JSON summary for downstream validation.
Core Features & Use Cases
- Single-series DICOM to volume conversion with automatic sorting by ImagePositionPatient.
- affine calculation from ImageOrientationPatient and PixelSpacing, producing a robust NIfTI header.
- Outputs the volume (NIfTI) and a structured JSON summary including shape, spacing, and axcodes for verification tasks.
- Use Case: Engineering verification of orientation gates and geometry in synthetic CT fixtures.
Quick Start
Convert a single-series DICOM directory to a HU NIfTI volume by running the script and supplying the input directory.
Dependency Matrix
Required Modules
pydicomnibabelnumpytyper
Components
scripts
đŸ’» Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: dicom-series-to-volume Download link: https://github.com/sayalinvidia/sayali-skills-test/archive/main.zip#dicom-series-to-volume Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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