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dnanexus-integration

Orchestrate genomics workflows on DNAnexus with Python SDK integration.

1|Updated Mar 4, 2026
Search Tags:#cloud#genomics#workflows#data-management#dxpy#dnanexus
One-click install
npx skills add https://github.com/Hung-3008/agusta --skill dnanexus-integration-hung-3008
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: dnanexus-integration
Source: https://github.com/Hung-3008/agusta/tree/main/.agents/skills/dnanexus-integration
Command: npx skills add https://github.com/Hung-3008/agusta --skill dnanexus-integration-hung-3008

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

The DNAnexus integration skill provides a centralized guide for building, managing, and running genomics workflows on the DNAnexus cloud platform, enabling streamlined development, deployment, and data operations.

Core Features & Use Cases

  • App and applet development guidance including dxapp.json structure, entry points, and deployment workflows.
  • Data management and job execution patterns to run analyses, manage data objects, search and organize results, and chain multi-step pipelines.
  • Real-world scenarios include constructing a DNAnexus workflow for processing sequencing data, deploying dxpy-based scripts, and coordinating parallel subjobs.

Quick Start

Create and deploy a DNAnexus applet to process sequencing data end-to-end.

Frequently Asked Questions about dnanexus-integration

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate genomics workflows on the DNAnexus platform?▼

To automate genomics workflows on DNAnexus, you use this skill to guide app development, manage data objects, launch jobs, and chain multi-step pipelines using dxpy. It provides end-to-end orchestration patterns for processing sequencing data.

What is the best way to structure a DNAnexus applet for sequencing data?▼

The best way to structure a DNAnexus applet is by defining the dxapp.json configuration, specifying entry points, and following deployment workflows. This skill provides guidance on these structural patterns for building and deploying genomic apps.

Can I use dxpy to coordinate parallel subjobs in a DNAnexus workflow?▼

Yes, you can use dxpy to coordinate parallel subjobs in a DNAnexus workflow. This skill covers Python SDK integration patterns for deploying scripts and orchestrating multi-step pipelines for parallel data processing.

How does data management work when running DNAnexus job execution pipelines?▼

DNAnexus data management during job execution involves operations to search, organize, and manage data objects and analysis results. This skill details patterns for running analyses and chaining these operations into multi-step pipelines.

Do I need the Python SDK to build and deploy apps on the DNAnexus cloud?▼

You need the Python SDK, dxpy, to build and deploy scripts on the DNAnexus cloud. This skill integrates dxpy for app development, enabling scientists to automate data operations and job execution workflows.

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